中国分布式计算论坛

 找回密码
 新注册用户
搜索
查看: 7790|回复: 12

[新项目] [BOINC] [生命科学类] DNA@Home

[复制链接]
发表于 2010-7-27 00:23:16 | 显示全部楼层 |阅读模式
本帖最后由 霊烏路 空 于 2010-12-26 13:32 编辑

原本还处在规划阶段的DNA@Home项目即将发布任务,项目主办方发布了消息
2010年7月23日
存盘点已经能够正常工作, 对结核杆菌的内部测试已经完成,一周之类发送任务,而且是对于真实基因组的任务,不是测试数据
Finally an update -- checkpointing working in the application
So I didn't want to send out any workunits until I got checkpointing working, and good news after a couple long weeks and not to mention slamming my head against my computer a few times, the DNA@Home client application has working checkpointing.
This means we should have workunits being sent out within a week or so. We've also gotten the data we need for the Mycobacterium tuberculosis genome, so the first workunits will be doing work on a real genome as opposed to test data.
Expect updates more frequently now that I finally have something working.
23 Jul 2010 13:53:49 UTC

官方网站http://dnahome.cs.rpi.edu/dna/index.php
维基百科http://www.equn.com/wiki/DNA%40home

评分

参与人数 1基本分 +30 维基拼图 +15 收起 理由
霊烏路 空 + 30 + 15

查看全部评分

 楼主| 发表于 2010-7-27 00:28:20 | 显示全部楼层
继rna world之后dna也有项目啦,而且都是研究细菌的
发表于 2010-7-27 10:58:30 | 显示全部楼层
订阅它的 RSS 出现解析错误。。
发表于 2010-7-31 14:53:57 | 显示全部楼层
本帖最后由 zglloo 于 2010-7-31 14:56 编辑

MW 好像也是 RPI发起的 Rss不能解析估计是项目还在测试,用户档案也无法使用
 楼主| 发表于 2010-10-12 16:28:51 | 显示全部楼层
本帖最后由 zyll 于 2010-11-29 13:43 编辑

2010年10月4日
一周内发布任务
Another update -- workunits this week
For real this time. We were having some problems getting the checkpoints and results down to a manageable size. For a real data set (tuberculosis) they were running over 50 mb each. I think we've found a solution so we should really be able to start crunching this week.
--Travis 4 Oct 2010 18:05:50 UTC ·

评分

参与人数 1基本分 +30 维基拼图 +3 收起 理由
霊烏路 空 + 30 + 3

查看全部评分

 楼主| 发表于 2010-10-17 19:59:59 | 显示全部楼层

[BOINC] [生命科学类] DNA@Home

本帖最后由 zyll 于 2010-11-29 13:43 编辑

2010年10月12日
解决了存盘点问题,会编译Linux和Mac OS X 的任务,然后才是Windows任务
another update
So I've fixed a lot of the checkpointing issues. Working some magic, I've gotten the initial (stupid) checkpoint from 50mb down to a 200kb binary file. As the checkpoint is also a major part of the result being sent back, this is really good news because we'll be able to save a lot of information server side, and not clog up your hard drives.
I'm going to try and have OS X and linux applications compiled and some workunits available tonight. Then I need to figure out how to compile the application on windows. Thanks to everyone still hanging on in there.
--Travis 12 Oct 2010 21:50:41 UTC ·

评分

参与人数 1基本分 +30 维基拼图 +5 收起 理由
霊烏路 空 + 30 + 5

查看全部评分

 楼主| 发表于 2010-10-19 15:21:58 | 显示全部楼层
本帖最后由 zyll 于 2010-11-29 13:42 编辑

消息井喷了,Windows表示压力不大
2010年10月18日
更新Linux程序到版本0.04
updated the linux apps to 0.04
Looks like the linux binaries weren't statically linked which was causing at least one person some problems. 0.04 is statically linked which should fix this. 18 Oct 2010 21:01:35 UTC



2010年10月18日
新的测试程序test5和Linux二进制库
new test (test5) wus and linux binaries
I've started some new test workunits, as test5, and added a linux binary. Let me know if these work. 18 Oct 2010 19:56:36 UTC


2010年10月18日
测试服务器状态http://dnahome.cs.rpi.edu/dna/server_status2.php
testing server status
Trying a different page to see if this works. Can you guys access: http://dnahome.cs.rpi.edu/dna/server_status2.php 18 Oct 2010 8:27:11 UTC


2010年10月18日
开始新的WU test4
started some new workunits: test4
Looks like the other workunits didn't have a high enough rsc_fpops_bound, I've increased this and reduced the work they do. You can cancel any of the other WUs. 18 Oct 2010 7:06:08 UTC


2010年10月18日
更新OS X程序到版本0.02
updated the OS X applications to 0.02
I noticed I hadn't turned on the progress for the applications. Should be working in the new version now. 18 Oct 2010 5:30:20 UTC


2010年10月18日
服务器状态开始工作
server status (somewhat) working
I've added a link to the server status on the main page. I think it's working, let me know if you have any problems with it. 18 Oct 2010 5:29:33 UTC


2010年10月18日
第一批新任务创建
first new batch of wus created
I've added the first new batch of workunits. Sadly it looks like my one machine grabbed them all. I'm going to add some more and then work on getting the Linux (and then Windows) binaries available.
Let me know if you can grab any of them here, and how they're working.
--Travis                 18 Oct 2010 4:44:51 UTC

评分

参与人数 1基本分 +30 维基拼图 +10 收起 理由
霊烏路 空 + 30 + 10

查看全部评分

 楼主| 发表于 2010-11-5 23:36:48 | 显示全部楼层
本帖最后由 zyll 于 2010-11-29 13:38 编辑

2010年10月26日即将编译windows程序
Got the windows application to compile
So I finally got the application to compile in windows, so expect more workunits! Right now I just need to make sure that it's returning similar output to the linux/OSX binaries. 26 Oct 2010 6:33:13 UTC

评分

参与人数 1基本分 +30 维基拼图 +3 收起 理由
霊烏路 空 + 30 + 3

查看全部评分

 楼主| 发表于 2010-11-29 13:37:55 | 显示全部楼层
2010年11月25日windows程序有问题,代码要重写
haven't forgot about you guys
Here's an update. I'm having some rather major problems getting the windows application to return the same results as the linux/osx applications and it's looking like I'm going to have to do more than a bit of a code-rewrite.
I'll also be awarding credit next week for everyone who returned work (with a large bonus for waiting so long for it). 25 Nov 2010 7:20:01 UTC

评分

参与人数 1基本分 +30 维基拼图 +5 收起 理由
霊烏路 空 + 30 + 5

查看全部评分

 楼主| 发表于 2011-4-2 02:17:16 | 显示全部楼层
终于有任务了,不过RSS还是坏的
we're back
Finally fixed the server problem. Unfortunately I had to wipe out the workunits and results from the database. I've started up some new work and it looks like things are being sent out again. 1 Apr 2011 | 5:10:54 UTC · 评论
updated web and server code
I've updated the web and server code. I'm hoping this should fix some of the problems people have been seeing on the various webpages. Also, it looks like the RSS reader is working correctly now. 31 Mar 2011 | 19:50:30 UTC · 评论
new deadline 36 hours and max wus in progress
I've raised the deadline to 36 hours, so the project plays a bit more nicely with others, but I've dropped the max wus in progress to 2 (from 3) so more WUs get spread around to various hosts which should help test how well the application is working. 31 Mar 2011 | 18:48:49 UTC · 评论
starting more WUs
Looks like people are starving for some workunits, so I added another 600 to the wild, 'test_auto2_2'. Let me know how they're crunching. 31 Mar 2011 | 18:45:54 UTC · 评论
updated i686 OSX application
It looked like there were some problems with the 32 bit OS X application. I've updated it to version 0.13, so let me know if it's working now. 31 Mar 2011 | 3:34:14 UTC · 评论
 楼主| 发表于 2011-4-2 15:37:59 | 显示全部楼层
跑了两个任务,30分钟左右,一个任务50分
发表于 2014-2-9 14:33:23 | 显示全部楼层
2013年12月23日
merging projects
Hi Everyone,

Here's an update to the status of DNA@Home.

Currently, I have a student who has been working on getting files in the appropriate format for the application here. I think we're pretty close to getting work units sent back out. As opposed to what we were doing before, the new data files are from the human genome, and we'll be looking for protein binding sites that could potentially be related to different cancer causing genes -- I will get more information from this from our biologists here.

I also want to merge DNA@Home, Wildlife@Home and SubsetSum@Home so I can more easily provide feedback. I'm open to suggestions on how to do this. Right now I'm thinking about moving all the accounts into a new project and then have a combined forum for all three. If anyone has any good suggestions for an easy way to merge the three, I'd appreciate it.

Will have more updates, and hopefully more work units soon.

--Travis 23 Dec 2013 | 17:46:48 UTC

DNA@Home将开始研究人类基因组,特别是关于癌症的基因。
未来DNA@Home, Wildlife@Home和SubsetSum@Home三个项目很有可能融合。

另:@zyll 1L的项目网址已失效,现网址为:http://volunteer.cs.und.edu/dna/
发表于 2014-12-9 18:37:29 | 显示全部楼层
此项目已经成为Citizen Science Grid项目下的一个子项目,任务包将从Citizen Science Grid项目中发出

Notice for DNA@Home Users
DNA@Home is transitioning to a sub-project of Citizen Science Grid. DNA@Home workunits will be sent out from the Citizen Science Grid project. You can link your DNA@Home account to your account on Citizen Science Grid so it will continue to gain credit for completing DNA@Home workunits on Citizen Science Grid by visiting the link accounts webpage.
您需要登录后才可以回帖 登录 | 新注册用户

本版积分规则

论坛官方淘宝店开业啦~

小黑屋|手机版|Archiver|中国分布式计算总站 ( 沪ICP备05042587号 )

GMT+8, 2021-8-1 11:38

Powered by Discuz! X3.4

© 2001-2017 Comsenz Inc.

快速回复 返回顶部 返回列表