使用CUDA睿频大法成功解决LINUX下无TURBO的问题

cuda

回复 45# 金鹏

/etc/rc.d/rc.M那个错误我不清楚，后面那几个modules.dep错误是正常的，因为我把驱动都编译进内核了，关闭了module功能，也没有建立相应的modules目录和提供modules.dep文件。

Keyco

我来说说我的问题吧。
第一个有TB介入的8101包跑完之后，恰巧是我今早起床，打开一看，已经是第二个8101包在跑了，因为我不知道是不是12T模拟办法在原生LINUX下和VB下是否一样，所以没敢用。
但是一看吓了一条，TPF和没有用TB的时候完全一样。17：58秒啊。使用turbostat查看TB频率，对的，3.3G。查看功率计，370W。真是太奇怪了……
心里一凉，咋办咋办咋办。
于是想了一下，上次调试机器，把P-STATE这里的设置了SW_ALL的，所以重启，改回HW_ALL。
于是，现在8101的TPF回到了16分。比第一次跑8101慢了接近半分钟。功率计370W，turbostat查看是3.3G。
我现在就想看看是不是每次接新的包，TPF都会恢复到原来的17～18分钟。

金鹏

回复 46# cuda

RC.M那个在3.0.1-BFS下也有的，估计正常的

TPF的差异也许是不同序号的包差异，我这里BIOS设置和原来一样

看看下个6903包是否有得分了

Keyco

对了，我发现一个问题。
之前用代理，经常在WORK里面会留下各种00到09的上一个任务包的文档。这些文档，我应该直接删掉？（已经确认过上传成功的我删掉，不成功的我留着）
因为总感觉FAH会拿这些文档重新来算一遍。
但是当不用代理的时候，很少会有残留的任务包在里面。

金鹏

回复 47# Keyco

跑8101这个TPF和我3.0G的差不多，尽管是3.30G，我估计因为CUDA兄弟的内核没优化过，导致3.3G下的TPF和3.0G在3.0.1-BFS内核下的TPF差不多？

金鹏

回复 49# Keyco

这些文档不要删，有用处的，除了爆了的包的其他保留

cuda

这个TPF差别很大，用DLB和包的差异都难以解释。
能否把FAHlog.txt文件贴出来看看？

我来说说我的问题吧。
第一个有TB介入的8101包跑完之后，恰巧是我今早起床，打开一看，已经是第二个8101包 ...
Keyco 发表于 2012-7-25 21:16

Keyco

回复 52# cuda


    因为重启过了机器，所以头几个不正常的百分比没有了，我从FAH-out里面看到了完整的，但是不知为何记事本里面显示的是不换行的。我怎么给你看哦？我说的换行不是说指文本中的换行选项。而是真正的换行，如你们平时贴出来的那样一行一行的。

cuda

回复 53# Keyco

一般是发文时用“代码”功能来发，或者作为附件上传吧。
你说的不换行应该是unix格式和dos格式换行符的差异，用word打开另存txt就好了。

Keyco

回复 54# cuda

1. Linux SMP Console Edition ###################################################
   
2. ###############################################################################
   
3. 
   
4.                        Folding@Home Client Version 6.34
   
5. 
   
6.                           http://folding.stanford.edu
   
7. 
   
8. ###############################################################################
   
9. ###############################################################################
   
10. 
    
11. Launch directory: /usr/local/fah
    
12. Executable: ./fah6
    
13. Arguments: -bigadv -verbosity 9 -smp 32
    
14. 
    
15. [07:16:43] - Ask before connecting: No
    
16. [07:16:43] - User name: Keyco (Team 3213)
    
17. [07:16:43] - User ID: 49BD46A8103A98F7
    
18. [07:16:43] - Machine ID: 1
    
19. [07:16:43]
    
20. [07:16:44] Loaded queue successfully.
    
21. [07:16:44]
    
22. [07:16:44] + Processing work unit
    
23. [07:16:44] Core required: FahCore_a5.exe
    
24. [07:16:44] - Autosending finished units... [07:16:44]
    
25. [07:16:44] Trying to send all finished work units
    
26. [07:16:44] + No unsent completed units remaining.
    
27. [07:16:44] - Autosend completed
    
28. [07:16:44] Core found.
    
29. [07:16:44] Working on queue slot 05 [July 24 07:16:44 UTC]
    
30. [07:16:44] + Working ...
    
31. [07:16:44] - Calling './FahCore_a5.exe -dir work/ -nice 19 -suffix 05 -np 32 -checkpoint 15 -verbose -lifeline 461 -version 634'
    
32. 
    
33. thekraken: The Kraken 0.6 (compiled Mon Jan 30 20:54:52 MST 2012 by jeroen@Mail)
    
34. thekraken: Processor affinity wrapper for Folding@Home
    
35. thekraken: The Kraken comes with ABSOLUTELY NO WARRANTY; licensed under GPLv2
    
36. thekraken: PID: 484
    
37. thekraken: Logging to thekraken.log
    
38. [07:16:44]
    
39. [07:16:44] *------------------------------*
    
40. [07:16:44] Folding@Home Gromacs SMP Core
    
41. [07:16:44] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
    
42. [07:16:44]
    
43. [07:16:44] Preparing to commence simulation
    
44. [07:16:44] - Looking at optimizations...
    
45. [07:16:44] - Files status OK
    
46. [07:16:47] - Expanded 30312868 -> 33158016 (decompressed 109.3 percent)
    
47. [07:16:47] Called DecompressByteArray: compressed_data_size=30312868 data_size=33158016, decompressed_data_size=33158016 diff=0
    
48. [07:16:47] - Digital signature verified
    
49. [07:16:47]
    
50. [07:16:47] Project: 8101 (Run 1, Clone 9, Gen 15)
    
51. [07:16:47]
    
52. [07:16:48] Assembly optimizations on if available.
    
53. [07:16:48] Entering M.D.
    
54. [07:16:54] Using Gromacs checkpoints
    
55.                          :-)  G  R  O  M  A  C  S  (-:
    
56. 
    
57.                    Groningen Machine for Chemical Simulation
    
58. 
    
59.                             :-)  VERSION 4.5.3  (-:
    
60. 
    
61.         Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
    
62.       Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
    
63.         Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
    
64.            Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
    
65.                 Michael Shirts, Alfons Sijbers, Peter Tieleman,
    
66. 
    
67.                Berk Hess, David van der Spoel, and Erik Lindahl.
    
68. 
    
69.        Copyright (c) 1991-2000, University of Groningen, The Netherlands.
    
70.             Copyright (c) 2001-2010, The GROMACS development team at
    
71.         Uppsala University & The Royal Institute of Technology, Sweden.
    
72.             check out http://www.gromacs.org for more information.
    
73. 
    
74. 
    
75.                                :-)  Gromacs  (-:
    
76. 
    
77. [07:16:56] Mapping NT from 32 to 32
    
78. Reading file work/wudata_05.tpr, VERSION 4.5.4-dev-20110530-cc815 (single precision)
    
79. Starting 32 threads
    
80. 
    
81. Reading checkpoint file work/wudata_05.cpt generated: Tue Jul 24 06:12:37 2012
    
82. 
    
83. 
    
84. Making 2D domain decomposition 8 x 4 x 1
    
85. starting mdrun 'FP_membrane in water'
    
86. 4000000 steps,  16000.0 ps (continuing from step 3838745,  15355.0 ps).
    
87. [07:17:13] Resuming from checkpoint
    
88. [07:17:17] Verified work/wudata_05.log
    
89. [07:17:18] Verified work/wudata_05.trr
    
90. [07:17:18] Verified work/wudata_05.xtc
    
91. [07:17:18] Verified work/wudata_05.edr
    
92. [07:17:19] Completed 88745 out of 250000 steps  (35%)
    
93. 
    
94. NOTE: Turning on dynamic load balancing
    
95. 
    
96. [07:25:06] Completed 90000 out of 250000 steps  (36%)
    
97. [07:40:39] Completed 92500 out of 250000 steps  (37%)
    
98. [07:56:11] Completed 95000 out of 250000 steps  (38%)
    
99. [08:12:08] Completed 97500 out of 250000 steps  (39%)
    
100. [08:27:46] Completed 100000 out of 250000 steps  (40%)
     
101. [08:43:26] Completed 102500 out of 250000 steps  (41%)
     
102. [08:59:07] Completed 105000 out of 250000 steps  (42%)
     
103. [09:15:10] Completed 107500 out of 250000 steps  (43%)
     
104. [09:30:51] Completed 110000 out of 250000 steps  (44%)
     
105. [09:46:29] Completed 112500 out of 250000 steps  (45%)
     
106. [10:02:32] Completed 115000 out of 250000 steps  (46%)
     
107. [10:18:07] Completed 117500 out of 250000 steps  (47%)
     
108. [10:33:40] Completed 120000 out of 250000 steps  (48%)
     
109. [10:49:14] Completed 122500 out of 250000 steps  (49%)
     
110. [11:05:10] Completed 125000 out of 250000 steps  (50%)
     
111. [11:20:44] Completed 127500 out of 250000 steps  (51%)
     
112. [11:36:18] Completed 130000 out of 250000 steps  (52%)
     
113. [11:51:50] Completed 132500 out of 250000 steps  (53%)
     
114. [12:07:42] Completed 135000 out of 250000 steps  (54%)
     
115. [12:23:14] Completed 137500 out of 250000 steps  (55%)
     
116. [12:38:48] Completed 140000 out of 250000 steps  (56%)
     
117. [12:54:29] Completed 142500 out of 250000 steps  (57%)
     
118. [13:10:33] Completed 145000 out of 250000 steps  (58%)
     
119. [13:16:44] - Autosending finished units... [July 24 13:16:44 UTC]
     
120. [13:16:44] Trying to send all finished work units
     
121. [13:16:44] + No unsent completed units remaining.
     
122. [13:16:44] - Autosend completed
     
123. [13:26:16] Completed 147500 out of 250000 steps  (59%)
     
124. [13:41:56] Completed 150000 out of 250000 steps  (60%)
     
125. [13:57:31] Completed 152500 out of 250000 steps  (61%)
     
126. [14:13:33] Completed 155000 out of 250000 steps  (62%)
     
127. [14:29:09] Completed 157500 out of 250000 steps  (63%)
     
128. [14:44:45] Completed 160000 out of 250000 steps  (64%)
     
129. [15:00:40] Completed 162500 out of 250000 steps  (65%)
     
130. [15:16:16] Completed 165000 out of 250000 steps  (66%)
     
131. [15:31:49] Completed 167500 out of 250000 steps  (67%)
     
132. [15:47:25] Completed 170000 out of 250000 steps  (68%)
     
133. [16:03:20] Completed 172500 out of 250000 steps  (69%)
     
134. [16:18:53] Completed 175000 out of 250000 steps  (70%)
     
135. [16:34:28] Completed 177500 out of 250000 steps  (71%)
     
136. [16:50:08] Completed 180000 out of 250000 steps  (72%)
     
137. [17:06:10] Completed 182500 out of 250000 steps  (73%)
     
138. [17:21:49] Completed 185000 out of 250000 steps  (74%)
     
139. [17:37:25] Completed 187500 out of 250000 steps  (75%)
     
140. [17:52:58] Completed 190000 out of 250000 steps  (76%)
     
141. [18:08:53] Completed 192500 out of 250000 steps  (77%)
     
142. [18:24:27] Completed 195000 out of 250000 steps  (78%)
     
143. [18:40:03] Completed 197500 out of 250000 steps  (79%)
     
144. [18:55:39] Completed 200000 out of 250000 steps  (80%)
     
145. [19:11:35] Completed 202500 out of 250000 steps  (81%)
     
146. [19:16:44] - Autosending finished units... [July 24 19:16:44 UTC]
     
147. [19:16:44] Trying to send all finished work units
     
148. [19:16:44] + No unsent completed units remaining.
     
149. [19:16:44] - Autosend completed
     
150. [19:27:12] Completed 205000 out of 250000 steps  (82%)
     
151. [19:42:49] Completed 207500 out of 250000 steps  (83%)
     
152. [19:58:27] Completed 210000 out of 250000 steps  (84%)
     
153. [20:14:24] Completed 212500 out of 250000 steps  (85%)
     
154. [20:30:02] Completed 215000 out of 250000 steps  (86%)
     
155. [20:45:37] Completed 217500 out of 250000 steps  (87%)
     
156. [21:01:33] Completed 220000 out of 250000 steps  (88%)
     
157. [21:17:12] Completed 222500 out of 250000 steps  (89%)
     
158. [21:33:10] Completed 225000 out of 250000 steps  (90%)
     
159. [21:49:15] Completed 227500 out of 250000 steps  (91%)
     
160. [22:05:34] Completed 230000 out of 250000 steps  (92%)
     
161. [22:21:12] Completed 232500 out of 250000 steps  (93%)
     
162. [22:36:45] Completed 235000 out of 250000 steps  (94%)
     
163. [22:52:20] Completed 237500 out of 250000 steps  (95%)
     
164. [23:08:17] Completed 240000 out of 250000 steps  (96%)
     
165. [23:23:52] Completed 242500 out of 250000 steps  (97%)
     
166. [23:39:27] Completed 245000 out of 250000 steps  (98%)
     
167. [23:55:02] Completed 247500 out of 250000 steps  (99%)
     
168. [00:10:56] Completed 250000 out of 250000 steps  (100%)
     
169. 
     
170. Writing final coordinates.
     
171. 
     
172. Average load imbalance: 0.5 %
     
173. Part of the total run time spent waiting due to load imbalance: 0.1 %
     
174. Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % Y 0 %
     
175. 
     
176. 
     
177.         Parallel run - timing based on wallclock.
     
178. 
     
179.                NODE (s)   Real (s)      (%)
     
180.        Time:  60847.190  60847.190    100.0
     
181.                        16h54:07
     
182.                (Mnbf/s)   (GFlops)   (ns/day)  (hour/ns)
     
183. Performance:   1151.686     59.677      0.916     26.204
     
184. 
     
185. Thanx for Using GROMACS - Have a Nice Day
     
186. 
     
187. [00:11:07] DynamicWrapper: Finished Work Unit: sleep=10000
     
188. [00:11:17]
     
189. [00:11:17] Finished Work Unit:
     
190. [00:11:17] - Reading up to 64340496 from "work/wudata_05.trr": Read 64340496
     
191. [00:11:17] trr file hash check passed.
     
192. [00:11:17] - Reading up to 31553760 from "work/wudata_05.xtc": Read 31553760
     
193. [00:11:17] xtc file hash check passed.
     
194. [00:11:17] edr file hash check passed.
     
195. [00:11:17] logfile size: 192885
     
196. [00:11:17] Leaving Run
     
197. [00:11:20] - Writing 96248017 bytes of core data to disk...
     
198. [00:11:34] Done: 96247505 -> 91513110 (compressed to 5.8 percent)
     
199. [00:11:34]   ... Done.
     
200. [00:20:27] - Shutting down core
     
201. [00:20:27]
     
202. [00:20:27] Folding@home Core Shutdown: FINISHED_UNIT
     
203. [00:21:31] CoreStatus = 64 (100)
     
204. [00:21:31] Unit 5 finished with 70 percent of time to deadline remaining.
     
205. [00:21:31] Updated performance fraction: 0.619567
     
206. [00:21:31] Sending work to server
     
207. [00:21:31] Project: 8101 (Run 1, Clone 9, Gen 15)
     
208. 
     
209. 
     
210. [00:21:31] + Attempting to send results [July 25 00:21:31 UTC]
     
211. [00:21:31] - Reading file work/wuresults_05.dat from core
     
212. [00:21:31]   (Read 91513622 bytes from disk)
     
213. [00:21:31] Connecting to http://128.143.231.201:8080/
     
214. [00:33:20] Posted data.
     
215. [00:33:20] Initial: 0000; - Uploaded at ~126 kB/s
     
216. [00:33:20] - Averaged speed for that direction ~43 kB/s
     
217. [00:33:20] + Results successfully sent
     
218. [00:33:20] Thank you for your contribution to Folding@Home.
     
219. [00:33:20] + Number of Units Completed: 4
     
220. 
     
221. thekraken: The Kraken 0.6 (compiled Mon Jan 30 20:54:52 MST 2012 by jeroen@Mail)
     
222. thekraken: Processor affinity wrapper for Folding@Home
     
223. thekraken: The Kraken comes with ABSOLUTELY NO WARRANTY; licensed under GPLv2
     
224. thekraken: PID: 1303
     
225. thekraken: Logging to thekraken.log
     
226. [00:36:31] Trying to send all finished work units
     
227. [00:36:31] + No unsent completed units remaining.
     
228. [00:36:31] - Preparing to get new work unit...
     
229. [00:36:31] Cleaning up work directory
     
230. [00:36:31] + Attempting to get work packet
     
231. [00:36:31] Passkey found
     
232. [00:36:31] - Will indicate memory of 16066 MB
     
233. [00:36:31] - Connecting to assignment server
     
234. [00:36:31] Connecting to http://assign.stanford.edu:8080/
     
235. [00:36:32] Posted data.
     
236. [00:36:32] Initial: 8F80; - Successful: assigned to (128.143.231.201).
     
237. [00:36:32] + News From Folding@Home: Welcome to Folding@Home
     
238. [00:36:32] Loaded queue successfully.
     
239. [00:36:32] Sent data
     
240. [00:36:32] Connecting to http://128.143.231.201:8080/
     
241. [00:36:39] Posted data.
     
242. [00:36:39] Initial: 0000; - Receiving payload (expected size: 30310642)
     
243. [00:36:52] - Downloaded at ~2276 kB/s
     
244. [00:36:52] - Averaged speed for that direction ~1311 kB/s
     
245. [00:36:52] + Received work.
     
246. [00:36:52] Trying to send all finished work units
     
247. [00:36:52] + No unsent completed units remaining.
     
248. [00:36:52] + Closed connections
     
249. [00:36:52]
     
250. [00:36:52] + Processing work unit
     
251. [00:36:52] Core required: FahCore_a5.exe
     
252. [00:36:52] Core found.
     
253. [00:36:52] Working on queue slot 06 [July 25 00:36:52 UTC]
     
254. [00:36:52] + Working ...
     
255. [00:36:52] - Calling './FahCore_a5.exe -dir work/ -nice 19 -suffix 06 -np 32 -checkpoint 15 -verbose -lifeline 461 -version 634'
     
256. 
     
257. thekraken: The Kraken 0.6 (compiled Mon Jan 30 20:54:52 MST 2012 by jeroen@Mail)
     
258. thekraken: Processor affinity wrapper for Folding@Home
     
259. thekraken: The Kraken comes with ABSOLUTELY NO WARRANTY; licensed under GPLv2
     
260. thekraken: PID: 1306
     
261. thekraken: Logging to thekraken.log
     
262. [00:36:53]
     
263. [00:36:53] *------------------------------*
     
264. [00:36:53] Folding@Home Gromacs SMP Core
     
265. [00:36:53] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
     
266. [00:36:53]
     
267. [00:36:53] Preparing to commence simulation
     
268. [00:36:53] - Looking at optimizations...
     
269. [00:36:53] - Created dyn
     
270. [00:36:53] - Files status OK
     
271. [00:36:55] - Expanded 30310130 -> 33158016 (decompressed 109.3 percent)
     
272. [00:36:55] Called DecompressByteArray: compressed_data_size=30310130 data_size=33158016, decompressed_data_size=33158016 diff=0
     
273. [00:36:55] - Digital signature verified
     
274. [00:36:55]
     
275. [00:36:55] Project: 8101 (Run 27, Clone 1, Gen 10)
     
276. [00:36:55]
     
277. [00:36:55] Assembly optimizations on if available.
     
278. [00:36:55] Entering M.D.
     
279.                          :-)  G  R  O  M  A  C  S  (-:
     
280. 
     
281.                    Groningen Machine for Chemical Simulation
     
282. 
     
283.                             :-)  VERSION 4.5.3  (-:
     
284. 
     
285.         Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
     
286.       Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
     
287.         Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
     
288.            Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
     
289.                 Michael Shirts, Alfons Sijbers, Peter Tieleman,
     
290. 
     
291.                Berk Hess, David van der Spoel, and Erik Lindahl.
     
292. 
     
293.        Copyright (c) 1991-2000, University of Groningen, The Netherlands.
     
294.             Copyright (c) 2001-2010, The GROMACS development team at
     
295.         Uppsala University & The Royal Institute of Technology, Sweden.
     
296.             check out http://www.gromacs.org for more information.
     
297. 
     
298. 
     
299.                                :-)  Gromacs  (-:
     
300. 
     
301. Reading file work/wudata_06.tpr, VERSION 4.5.4-dev-20110530-cc815 (single precision)
     
302. [00:37:02] Mapping NT from 32 to 32
     
303. Starting 32 threads
     
304. Making 2D domain decomposition 8 x 4 x 1
     
305. starting mdrun 'FP_membrane in water'
     
306. 2750000 steps,  11000.0 ps (continuing from step 2500000,  10000.0 ps).
     
307. [00:37:04] Completed 0 out of 250000 steps  (0%)
     
308. [00:53:24] ng M.D.
     
309. [00:53:30] Using Gromacs checkpoints
     
310.                          :-)  G  R  O  M  A  C  S  (-:
     
311. 
     
312.                    Groningen Machine for Chemical Simulation
     
313. 
     
314.                             :-)  VERSION 4.5.3  (-:
     
315. 
     
316.         Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
     
317.       Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
     
318.         Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
     
319.            Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
     
320.                 Michael Shirts, Alfons Sijbers, Peter Tieleman,
     
321. 
     
322.                Berk Hess, David van der Spoel, and Erik Lindahl.
     
323. 
     
324.        Copyright (c) 1991-2000, University of Groningen, The Netherlands.
     
325.             Copyright (c) 2001-2010, The GROMACS development team at
     
326.         Uppsala University & The Royal Institute of Technology, Sweden.
     
327.             check out http://www.gromacs.org for more information.
     
328. 
     
329. 
     
330.                                :-)  Gromacs  (-:
     
331. 
     
332. [00:53:32] Mapping NT from 32 to 32
     
333. Reading file work/wudata_06.tpr, VERSION 4.5.4-dev-20110530-cc815 (single precision)
     
334. Starting 32 threads
     
335. 
     
336. Reading checkpoint file work/wudata_06.cpt generated: Wed Jul 25 00:52:06 2012
     
337. 
     
338. 
     
339. Making 2D domain decomposition 8 x 4 x 1
     
340. starting mdrun 'FP_membrane in water'
     
341. 2750000 steps,  11000.0 ps (continuing from step 2502195,  10008.8 ps).
     
342. [00:53:52] Resuming from checkpoint
     
343. [00:53:55] Verified work/wudata_06.log
     
344. [00:53:55] Verified work/wudata_06.trr
     
345. [00:53:55] Verified work/wudata_06.xtc
     
346. [00:53:55] Verified work/wudata_06.edr
     
347. [00:53:56] Completed 2195 out of 250000 steps  (0%)
     
348. [00:56:07] Completed 2500 out of 250000 steps  (1%)
     
349. [01:14:24] Completed 5000 out of 250000 steps  (2%)
     
350. [01:16:44] - Autosending finished units... [July 25 01:16:44 UTC]
     
351. [01:16:44] Trying to send all finished work units
     
352. [01:16:44] + No unsent completed units remaining.
     
353. [01:16:44] - Autosend completed
     
354. [01:32:23] Completed 7500 out of 250000 steps  (3%)
     
355. [01:50:21] Completed 10000 out of 250000 steps  (4%)
     
356. [01:59:16] ***** Got a SIGTERM signal (15)
     
357. [01:59:16] Killing all core threads
     
358. 
     
359. Folding@Home Client Shutdown.
     
360. 
     
361. 
     
362. Received the TERM signal, stopping at the next NS step
     
363. 
     
364. 
     
365. Note: Please read the license agreement (fah6 -license). Further
     
366. use of this software requires that you have read and accepted this agreement.
     
367. 
     
368. 32 cores detected
     
369. 
     
370. 
     
371. --- Opening Log file [July 25 02:03:33 UTC]
     
372. 
     
373. 
     
374. # Linux SMP Console Edition ###################################################
     
375. ###############################################################################
     
376. 
     
377.                        Folding@Home Client Version 6.34
     
378. 
     
379.                           http://folding.stanford.edu
     
380. 
     
381. ###############################################################################
     
382. ###############################################################################
     
383. 
     
384. Launch directory: /usr/local/fah
     
385. Executable: ./fah6
     
386. Arguments: -bigadv -verbosity 9 -smp 32
     
387. 
     
388. [02:03:33] - Ask before connecting: No
     
389. [02:03:33] - User name: Keyco (Team 3213)
     
390. [02:03:33] - User ID: 49BD46A8103A98F7
     
391. [02:03:33] - Machine ID: 1
     
392. [02:03:33]
     
393. [02:03:33] Loaded queue successfully.
     
394. [02:03:33]
     
395. [02:03:33] + Processing work unit
     
396. [02:03:33] Core required: FahCore_a5.exe
     
397. [02:03:33] - Autosending finished units... [July 25 02:03:33 UTC]
     
398. [02:03:33] Trying to send all finished work units
     
399. [02:03:33] + No unsent completed units remaining.
     
400. [02:03:33] - Autosend completed
     
401. [02:03:33] Core found.
     
402. [02:03:33] Working on queue slot 06 [July 25 02:03:33 UTC]
     
403. [02:03:33] + Working ...
     
404. [02:03:33] - Calling './FahCore_a5.exe -dir work/ -nice 19 -suffix 06 -np 32 -checkpoint 15 -verbose -lifeline 456 -version 634'
     
405. 
     
406. thekraken: The Kraken 0.6 (compiled Mon Jan 30 20:54:52 MST 2012 by jeroen@Mail)
     
407. thekraken: Processor affinity wrapper for Folding@Home
     
408. thekraken: The Kraken comes with ABSOLUTELY NO WARRANTY; licensed under GPLv2
     
409. thekraken: PID: 497
     
410. thekraken: Logging to thekraken.log
     
411. [02:03:33]
     
412. [02:03:33] *------------------------------*
     
413. [02:03:33] Folding@Home Gromacs SMP Core
     
414. [02:03:33] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
     
415. [02:03:33]
     
416. [02:03:33] Preparing to commence simulation
     
417. [02:03:33] - Looking at optimizations...
     
418. [02:03:33] - Files status OK
     
419. [02:03:36] - Expanded 30310130 -> 33158016 (decompressed 109.3 percent)
     
420. [02:03:36] Called DecompressByteArray: compressed_data_size=30310130 data_size=33158016, decompressed_data_size=33158016 diff=0
     
421. [02:03:36] - Digital signature verified
     
422. [02:03:36]
     
423. [02:03:36] Project: 8101 (Run 27, Clone 1, Gen 10)
     
424. [02:03:36]
     
425. [02:03:36] Assembly optimizations on if available.
     
426. [02:03:36] Entering M.D.
     
427. [02:03:42] Using Gromacs checkpoints
     
428.                          :-)  G  R  O  M  A  C  S  (-:
     
429. 
     
430.                    Groningen Machine for Chemical Simulation
     
431. 
     
432.                             :-)  VERSION 4.5.3  (-:
     
433. 
     
434.         Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
     
435.       Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
     
436.         Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
     
437.            Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
     
438.                 Michael Shirts, Alfons Sijbers, Peter Tieleman,
     
439. 
     
440.                Berk Hess, David van der Spoel, and Erik Lindahl.
     
441. 
     
442.        Copyright (c) 1991-2000, University of Groningen, The Netherlands.
     
443.             Copyright (c) 2001-2010, The GROMACS development team at
     
444.         Uppsala University & The Royal Institute of Technology, Sweden.
     
445.             check out http://www.gromacs.org for more information.
     
446. 
     
447. 
     
448.                                :-)  Gromacs  (-:
     
449. 
     
450. [02:03:44] Mapping NT from 32 to 32
     
451. Reading file work/wudata_06.tpr, VERSION 4.5.4-dev-20110530-cc815 (single precision)
     
452. Starting 32 threads
     
453. 
     
454. Reading checkpoint file work/wudata_06.cpt generated: Wed Jul 25 01:53:53 2012
     
455. 
     
456. 
     
457. Making 2D domain decomposition 8 x 4 x 1
     
458. starting mdrun 'FP_membrane in water'
     
459. 2750000 steps,  11000.0 ps (continuing from step 2510495,  10042.0 ps).
     
460. [02:03:48] Resuming from checkpoint
     
461. [02:04:03] Verified work/wudata_06.log
     
462. [02:04:03] Verified work/wudata_06.trr
     
463. [02:04:04] Verified work/wudata_06.xtc
     
464. [02:04:04] Verified work/wudata_06.edr
     
465. [02:04:04] Completed 10495 out of 250000 steps  (4%)
     
466. [02:16:54] Completed 12500 out of 250000 steps  (5%)
     
467. [02:32:57] Completed 15000 out of 250000 steps  (6%)
     
468. [02:49:02] Completed 17500 out of 250000 steps  (7%)
     
469. [03:05:27] Completed 20000 out of 250000 steps  (8%)
     
470. [03:21:28] Completed 22500 out of 250000 steps  (9%)
     
471. [03:37:32] Completed 25000 out of 250000 steps  (10%)
     
472. [03:53:36] Completed 27500 out of 250000 steps  (11%)
     
473. [04:10:02] Completed 30000 out of 250000 steps  (12%)
     
474. [04:26:04] Completed 32500 out of 250000 steps  (13%)
     
475. [04:42:06] Completed 35000 out of 250000 steps  (14%)
     
476. [04:58:08] Completed 37500 out of 250000 steps  (15%)
     
477. [05:14:31] Completed 40000 out of 250000 steps  (16%)
     
478. [05:30:35] Completed 42500 out of 250000 steps  (17%)
     
479. [05:46:37] Completed 45000 out of 250000 steps  (18%)
     
480. [06:03:00] Completed 47500 out of 250000 steps  (19%)
     
481. [06:19:06] Completed 50000 out of 250000 steps  (20%)
     
482. [06:35:10] Completed 52500 out of 250000 steps  (21%)
     
483. [06:51:14] Completed 55000 out of 250000 steps  (22%)
     
484. [07:07:44] Completed 57500 out of 250000 steps  (23%)
     
485. [07:23:58] Completed 60000 out of 250000 steps  (24%)
     
486. [07:40:14] Completed 62500 out of 250000 steps  (25%)
     
487. [07:56:32] Completed 65000 out of 250000 steps  (26%)
     
488. [08:03:33] - Autosending finished units... [July 25 08:03:33 UTC]
     
489. [08:03:33] Trying to send all finished work units
     
490. [08:03:33] + No unsent completed units remaining.
     
491. [08:03:33] - Autosend completed
     
492. [08:13:14] Completed 67500 out of 250000 steps  (27%)
     
493. [08:29:27] Completed 70000 out of 250000 steps  (28%)
     
494. [08:45:38] Completed 72500 out of 250000 steps  (29%)
     
495. [09:02:10] Completed 75000 out of 250000 steps  (30%)
     
496. [09:18:19] Completed 77500 out of 250000 steps  (31%)
     
497. [09:34:32] Completed 80000 out of 250000 steps  (32%)
     
498. [09:50:43] Completed 82500 out of 250000 steps  (33%)
     
499. [10:07:14] Completed 85000 out of 250000 steps  (34%)
     
500. [10:23:25] Completed 87500 out of 250000 steps  (35%)
     
501. [10:39:34] Completed 90000 out of 250000 steps  (36%)
     
502. [10:55:43] Completed 92500 out of 250000 steps  (37%)
     
503. [11:12:10] Completed 95000 out of 250000 steps  (38%)
     
504. [11:28:15] Completed 97500 out of 250000 steps  (39%)
     
505. [11:44:18] Completed 100000 out of 250000 steps  (40%)
     
506. [12:00:41] Completed 102500 out of 250000 steps  (41%)
     
507. [12:16:49] Completed 105000 out of 250000 steps  (42%)
     
508. [12:32:57] Completed 107500 out of 250000 steps  (43%)
     
509. [12:49:06] Completed 110000 out of 250000 steps  (44%)
     
510. [13:05:43] Completed 112500 out of 250000 steps  (45%)
     
511. [13:21:45] Completed 115000 out of 250000 steps  (46%)
     
512. [13:37:48] Completed 117500 out of 250000 steps  (47%)

复制代码

金鹏

回复 55# Keyco

看来兄弟的这个包没有打开DLB。

cuda

回复 55# Keyco

是的，从log看果然第1个包DLB打开了，第2个包DLB没打开，TPF差了20多秒。
不过第2个包在一开始的时候(01:30前后)确实很慢，TPF接近18分钟，会不会是后台在运行什么程序？

Keyco

LINUX跑分机呢。。无其它任何程序。

cuda

回复 58# Keyco

下次如果再遇到这样的情况，可用top命令查看CPU占用率是否正常，此外还可用dmesg命令，查看是否有内核出错信息。

Keyco

GOT IT